Definitely don't put off treating lyme. If I were you I would start on the cowden protocol as your base treatment and then add in other things like Diatomaceous earth, humaworm, etc etc but the cowden protocol does have some good anti- parasite effects. But you should definitely add in other stuff for babesia (artemesinin and cryptolepsis).
Whenever the cowden protocol has you skipping the anti microbials (2 days every weeks or so) don't take your anti - parasite or any other anti microbial...it tricks the lyme bugs into coming out of hiding...