Lyme is a tricky one. There is an anitbiotic called clindimicin--fairly cheap, and is very effective. The parasite has to go before other related things like gladular and yeast problems. The Antibiotic can put you at risk of developing c. difficile, a nasty bacteria. you can limit risk by throughly cleaning soil-based foods, and cooking every thing on high-heat.
I assume you have heard of the Vit.C\salt cures? If not google that--------Shroom

Try Samento (a form of Cat's Claw) for the Lyme, and some extra Kelp (Iodine) for the Hypothyroid.

The Candida hangs around because I've heard that it "piggy-backs" on the Lyme. I would try to deal with the Lyme first.